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3 Reasons Gluten Intolerance May Be More Serious Than Celiac Disease

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Recent news stories have downplayed the significance of non-celiac gluten sensitivity, even going as far as suggesting that it doesn’t exist. But a growing body of evidence has proven that gluten intolerance is not only real, but is potentially a much larger problem than celiac disease.

non-celiac gluten sensitivity
Non-celiac gluten sensitivity is more common than once thought. iStock.com/jeka1984

I previously wrote an article called “Is Gluten Sensitivity Real” which critiqued a spate of news reports suggesting that nonceliac gluten sensitivity (NCGS) doesn’t exist. These news stories referred to a study indicating that some people who believed they were reacting to gluten were actually reacting to a class of poorly absorbed carbohydrates (which include wheat, among many other foods) called FODMAPs.

You can read the full article above for details, but the takeaway was that the study those stories were based on in no way disproved the existence of NCGS, nor did it overturn the large body of evidence that links it to a variety of health problems ranging from type 1 diabetes, to allergies, to schizophrenia, to autism spectrum disorders. There is little doubt among those who are familiar with the scientific literature that NCGS is a real condition. 

Yet despite this, we continue to see headlines in the media like this:

These stories—and many other like them—argue that nonceliac gluten intolerance is rare, and that people who eliminate gluten from their diet are just silly fad followers. In this article, however, I’m going to present three reasons why NCGS is not only a bonafide condition, but may in fact be a much more serious problem than celiac disease.

#1: Celiac Disease Is Far Easier to Diagnose Than NCGS

According to some estimates, for every diagnosed case of celiac disease (CD), there are 6.4 undiagnosed cases that remain undiagnosed—the majority of which are atypical or “silent” forms with no damage to the gut. (1) This silent form of CD is far from harmless; it is associated with a nearly fourfold increase in the risk of death. (2)

I believe that patients with NCGS are even more likely than patients with CD to go undiagnosed. Most gastroenterologists today know how to screen for celiac disease. They will typically test for antibodies to antibodies to alpha gliadin, transglutaminase-2, deamidated gliadin, and endomysium, and if positive do a biopsy to determine if tissue damage is present.

However, we now know that people can (and do) react to several other components of wheat above and beyond alpha gliadin, the component that is implicated in CD. These include other epitopes of gliadin (beta, gamma, omega), glutenin, wheat germ agglutinin (WGA), gluteomorphin, and deamidated gliadin. What’s more, people can react to other types of tissue transglutaminase, including type 3—primarily found in the skin—and type 6—primarily found in the brain. (3, 4, 5, 6, 7, 8)

Why the “gluten intolerance haters” are wrong.#gluten #glutenintolerance

So, imagine a scenario where the patient is reacting to deamidated gliadin, glutenin, gluteomorphin, and either transglutaminase-3 or -6, but not reacting to alpha gliadin or transglutaminase-2—which are the antibodies used to screen for CD by most doctors. They will remain undiagnosed, and may continue to eat gluten for the rest of their lives, putting themselves at serious risk for autoimmune and other diseases.

This is not a hypothetical situation. In fact, I see cases like this all the time in my practice. Here is a screenshot from a recent test I ran on a patient. I use a much more thorough test for wheat and gluten intolerance called Array 3 from Cyrex Laboratories. Unlike other tests, it measures antibodies not only to alpha gliadin and transglutaminase-2, but also many of the other components of the wheat protein I mentioned above, as well as transglutaminase-3 and 6.

gluten chart copy

This patient is not reacting to alpha gliadin or transglutaminase-2. Had they been tested by their conventional doctor, they would have been told that they do not have celiac disease or gluten intolerance.

However, as you can see, she is reacting quite significantly to several different components of wheat, including:

  • Native and deamidated gliadin and gluteomorphin, which are compounds produced during the digestion of wheat.
  • Glutenin, which is the other major fraction of the wheat protein, along with gliadin.
  • Gliadin-transglutaminase complex, which indicates that the patient is experiencing an autoimmune reaction to wheat.
  • Transglutaminase-3, which is expressed primarily in the skin, and to a lesser extent in the brain and placenta.
  • Transglutaminase-6, which is expressed in the brain and nervous system.

When this patient consumes wheat or other gluten-containing foods, she may not experience the classic digestive symptoms associated with CD or NCGS, because she is not producing antibodies to transglutaminase-2 (which is mostly expressed in the gut). Instead, her intolerance of wheat could manifest in skin conditions like eczema or psoriasis, and in neurological or brain-related conditions like depression, peripheral neuropathy, or ADHD. (9, 10)

Worst of all, if this patient had not had this test, and had continued to eat wheat and gluten for the rest of her life, it’s likely that she would have been at much higher risk for the long list of serious conditions that are associated with gluten intolerance, such as multiple sclerosis, ataxia, diabetes, and even Amyotrophic Lateral Sclerosis (Lou Gehrig’s disease). (11, 12, 13, 14)

Unfortunately, this patient is not the exception—she is the rule. I’ve seen so many test results just like this, where the patient would have been misdiagnosed as not having gluten intolerance had they gone to a conventional doctor.

This presents another obvious problem, of course: if very few health care providers are doing the correct testing for gluten intolerance (like the panel from Cyrex above), then how can we possibly know what the true prevalence of NCGS is? We can’t—but given everything I’ve written above, we can certainly suspect that it’s much higher than currently believed.

According to Cyrex Labs, 1 in 4 people that take the Array 3 panel test positive for some form of wheat or gluten intolerance. Granted, this is not a representative sample, since most people that take the Cyrex panel are dealing with chronic illness of some kind.

Even with the limitations of current testing, however, some researchers have speculated that NCGS may affect as many as 1 in 10 people. (15) I suspect this is accurate, if not conservative.

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#2: Current Cultural Attitudes toward NCGS Mean More People Will Remain Undiagnosed

There has been a big backlash in both the mainstream media and on social media channels against the idea of gluten intolerance. Despite overwhelming evidence to the contrary, uninformed journalists and armchair Facebook scientists continue to argue that NCGS is some kind of widespread collective delusion—simply a figment of the imagination of anyone who claims to experience it.

And for reasons that I do not fully understand, they do so with an almost religious fervor.

The “gluten intolerance haters” seemed to emerge in force after a paper published by Gibson et al. in 2013 made the rounds in the media. This study found that a group of patients with irritable bowel syndrome (IBS) were not sensitive to gluten, but instead were reacting to a group of poorly absorbed carbohydrates called FODMAPs. (16) Aside from the fact that this study did not in any way disprove the existence of NCGS, from a practical perspective the study findings would not have changed the behavior of most people with IBS who identified as being gluten intolerant, since wheat and many other gluten-containing grains are FODMAPs and should thus be avoided by these patients.

More importantly, however, in the last two years since the Gibson paper new studies have been published that directly contradict Gibson’s findings and strongly suggest that patients with IBS do, in fact, react adversely to gluten—and not just FODMAPs.

For example, a new double-blind, randomized trial out of Iran was specifically designed to determine whether a group of IBS patients reacted to gluten specifically, or simply improved for other reasons on a gluten-free diet. (17) Here’s how it worked:

  1. 80 patients followed an “almost-gluten-free” diet (dietary compliance was considered optimal if consumption of gluten was below 100 mg/day, the equivalent of roughly 1/8 tsp of wheat four).
  2. After six weeks, the 72 patients that complied with the diet and experienced significant improvement were then randomized into two groups: Group A, and Group B.
  3. Group A (35 patients) was given a 100 g packet containing a gluten meal (free of FODMAPs). Group B (37 patients) was given a placebo packet (100 g) containing rice flour, corn starch, and glucose.
  4. Patients in both groups consumed the powders for six weeks, while both groups continued on gluten-free diets.

After six weeks of the diet symptoms were controlled in only 26% of the gluten group, compared with 84% of the placebo group. In the gluten-containing group, all symptoms—especially bloating and abdominal pain—increased significantly one week after starting the gluten.

The authors point out that it is important to properly identify gluten intolerance and distinguish it from FODMAP intolerance because some recent research suggests that long-term low FODMAP diets may have adverse effects on the gut microbiome. One study found that a low FODMAP diet compared with a habitual diet reduced the proportion and concentration of Bifidobacteria, one of the most beneficial species of bacteria in the colon. (18) (Authors note: I will be exploring this issue in more detail in a future article.)

But I would add another equally serious consequence of misdiagnosing gluten intolerance as FODMAP intolerance, which is the increase in risk for numerous and sometimes serious diseases that occurs when someone with NCGS continues to consume gluten.

#3: Many Doctors and Patients Aren’t Serious Enough about NCGS Treatment

This last point is a natural consequence of the first two. If detecting NCGS in conventional medical settings is unlikely, and there is a strong cultural backlash against it, where does that leave the millions of people that are likely suffering from NCGS without even knowing it?

Even if they do suspect that they are gluten intolerant, they might be dissuaded from pursuing a strict gluten-free diet by their friends, social media contacts, or even their doctor, all of whom are likely uninformed on this subject and do not understand the deficiencies in conventional testing or the complexity of the topic.

Based on the research I’ve reviewed in this article, and several others I linked to here, we should be more aggressive—not less—in diagnosing and treating gluten intolerance.

We need greater access to test panels like Cyrex Labs Array 3, which is the only commercial test outside of a research setting that screens for antibodies to many of the proteomes in wheat, instead of just testing for alpha gliadin. We need better training for doctors on how to recognize the myriad of symptoms and conditions associated with gluten intolerance, so they don’t make the common mistake of assuming that the patient isn’t gluten intolerant if they don’t have digestive problems. And we need some prominent journalists to educate themselves, step forward, and take responsibility for treating this as the serious, potentially life-threatening problem that it is.

Even without access to tests like Array 3, an elimination/provocation trial where gluten is removed completely from the diet for 60 days and then reintroduced is still considered to be an accurate method of assessing gluten intolerance. Doctors should be much more proactive about recommending this to patients, and despite the claims of some mainstream nutritionists and dietitians to the contrary, there is no risk to removing gluten from the diet. (19) If anything, people on a gluten-free diet are more likely to increase their intake of essential nutrients, especially if they replace breads and other flour products with whole foods (rather than with gluten-free flour alternatives).

Finally, it’s worth pointing out that many people that are intolerant of gluten are also intolerant of other food proteins found in foods like dairy, eggs, and unfortunately, coffee. Studies have shown that about 50 percent of patients with CD show intolerance to casein, a protein in milk. (20)

This may explain why up to 30 percent of CD patients continue to have symptoms or clinical signs after adopting a gluten-free diet. (21) For this reason, I recommend a completely grain- and dairy-free diet during the gluten challenge period.

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633 Comments

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  1. I’m intolerant. I only discovered it while trying to address my acne. A friend said wheat and dairy are often culprits, so I dug in, found paleo (though am now more “primal,” I suppose), and found that it’s the gluten for me. Of course, after mostly giving it up for a long time, I noticed less bloat, more energy, etc. etc. I rarely talk about it anymore because I do feel like people are always trying to discredit the idea and laugh about how trendy it is. I can’t blame them, we have seen some ridiculous diet trends come and go over the years. But not all ideas should be thrown out just because they happen to become trendy, sometimes something is trendy because it just makes sense.

  2. I have not eaten wheat since the 1970s when I was diagnosed with hypoglycemia. I have since experimented with myriad other grains with the same result, fatigue and brain fog. I have encountered resistance based on the fact that I have never been tested for celiac disease. By trial and error, I have also discovered, as confirmed by this article, that eggs and dairy products, however brilliantly fermented, do not agree with me. Many thanks for the sharing this information with people like me, who get little to no support from our doctors!

  3. I love this article! I found out I was gluten intolerant by removing it from my diet. I didn’t have the typical celiac digestive problems, but I have suffered from eczema my entire life. I found that when I reintroduced the gluten, my eczema would return, my face would break out, and I’d experience a few days of brain fog. I’m glad that NCGS is getting some recognition because I always feel like a “liar” when I’m around some of my friends who have severe celiacs with all the lovely digestive issues. I’m glad that I don’t have those, but I still do have issues when I consume gluten and it’s great that there’s some evidence that it’s not in my head. Also… I love when my Italian grandmother asks how my “diet” is going and tells me how bad she feels for me! LOL

  4. Thanks for writing this Chris. There are still people out there who say that if you eliminate wheat containing products from your diet, you are not getting enough B vitamins. You know, eat your bread or you will be nutrient deficient.

    Anyway, I have been following a “Paleoish” plan for over 4 years. I am one of the people you featured in a blog post of success stories. I am still doing well without eating bread. (Laughing) I had a LOT of health problems before I eliminated gluten from my diet… I was gassy and bloated, but thought that was a normal consequence of eating food.

    I have maintained my weight loss, though peri-menopause has contributed to a 5 to 10 pound weight fluctuation. I can deal gracefully with gaining a few pounds as I get older, though I expect that will level off as my hormones normalize.

    My mother has also seen great success with this dietary lifestyle. I do wish others in my family would see the light and change their eating patterns. It is difficult to see those we love feeling miserable.

  5. I suppose I’ve been living with skin conditions since I was young but didn’t connect the dots until recently. Then this year I was diagnosed with a chronic autoimmune disorder. After strictly cutting out gluten and dairy I started noticing improvements. I’ll admit, in the beginning I had my doubts about ‘gluten intolerance’. For one, it was a staple part of my diet growing up, how could it possibly be causing problems only now. Secondly, there are so many other things that could have been the culprit that I didn’t want to speculate.

    Now I know that the effects of years of exposure are finally catching up with me and it is terrible. Similar to the majority of the population, my social circle has not yet fully excepted this problem in my life and who knows when they will. I can appreciate for some people it is a lifestyle choice but for others, like myself, it is a necessary change.

  6. I am gluten intolerant so far as I know. I took the one test and was negative. But…when I stopped gluten, over 3 years now, my arthritis has improved, my gut pain is gone, my alternating between diarrhea and constipation is gone, and I enjoy eating again. A couple times I have been given something with gluten and bingo, diarrhea and bowel pain the next day. I’ts real!

    • Also made my asthma better! The benefits of going GF are truly miraculous for me personally. But the public is so damning about it that makes it harder than it should be. Now we ask restaurants to specially prepare GF meals for us and we can now go out and enjoy ourselves, too.

  7. Chris, can gluten sensitivity cause unsteadiness on one’s feet? My 78 year old Mom is getting progressively more unsteady (walking carefully with legs splayed for balance). She exercises almost daily so I’m thinking it’s not her muscles and may be her cerebellum. In “Why Isn’t My Brain Working?” Dr. Kharrazian mentions unsteadiness may be a sign of a problem with the cerebellum. Could gluten intolerance be causing an autoimmune attack on her cerebellum? Mom is suspicious of anything that’s not mainstream medicine and it will be difficult to convince her to get a Cyrex test or go to an integrative practitioner. Any advice on what may be causing her condition and what I can do would be appreciated. Thanks.

  8. Hi Chris,
    I cut gluten out years ago, with a few minor trials over the past few years. In fact, due to various energy and digestive symptoms am on something close to an AIP diet, with coffee and chocolate being the hardest to drop. I have some pretty persistent symptoms that people keep saying looks like gluten reaction: dark black circles under eyes, fatigue, brain-fog, sore joints….
    Do u think it could indicate a cross-reactant with coffee or chocolate?
    I don’t have instant reactions to anything in my current diet except fructose, so it’s currently just an exhaustive daily challenge to wade through various persistent symptoms despite a very restrictive diet.

    How reliable are cross-reactant tests?

    • Have you ruled out mold sensitivity or environmental toxin.
      Coffee and chocolate are 2 of the highest mold contaminated foods, according to Dave Asprey.
      Check out his movie MOLDY and see if any of it rings true for you. According to his movie, 50% of buildings contain mold and 25% of us are genetically mold sensitive. It’s usually one of the first things a good FM doc inquires about when doing a case history review.

    • Mold is a possibility, but people who react to gluten sometimes react to the proteins in coffee and chocolate as well (unfortunately).

      • I am very interested in the types of reactions coffee causes in gluten-intolerant people. Can you elaborate?

  9. I am gluten intolerant! I was diagnosed with graves disease 20 years ago! I now see a ND. He does CRP and ANA testing on me every year! Both test were high even though now I feel well. He had me stop eating all gluten and retested me 4 months later! WOW both indicators went into normal range! He says there you can’t eat gluten. Could these indicators, CRP inflammation and ANA antibody test be high with a gluten intolerance? I am sure I wouldn’t have an autoimmune disease if I stopped eating gluten many years ago!

  10. I was diagnosed with gluten intolerance by a psychiatrist several years ago. I was suffering from depression and ADHD. I thought he was crazy – telling me that a Paleo diet would help. It did – and I am off all of my meds today and happy. I don’t remember what lab he used for testing. I do know that I tested negative for Celiac, so doctors, wait staff, and sometimes family do not take me seriously. The societal and cultural backlash can be difficult, but it’s worth hanging in there!

  11. I was diagnosed with an IGA food intolerance test for Gluten and Dairy and they have came back positive. I have been Gluten free for over 2 years basically and to be honest. I felt a slight improvement but it didn’t cure my digestive issues with bloating and functional dyspepsia. I’m now trying the Paleo/SCD diet as I was recently diagnosed with leaky gut. Now did gluten cause my leaky gut? That’s another question entirely!

  12. I am a family physician who developed recurrent angioedema 5 years ago, eventually found to be gluten (wheat) related. This was prior to the book “wheat belly” and before Paleo was as common word as well. I know very well how the medical establishment views anything new that challenges the traditional paradigm. Fortunately, my own MD of 30 years, is an open minded and pragmatic fellow, and we sorted things out. The angioedma resolved, as did 30 years of migraine, dermatitis, and GERD, as well a 10 lbs of belly fat. To say that I became a “crusader” in my own practice after this is probably accurate. I have lost count in terms of the number of people who have had dramatic improvements in their health due to my advice regarding gluten and fodmap issues. That said, in a general population (not the self selected folks that seek out the Dr Kressors of the world), there is more often than not, tremendous resistance to this advice, sometimes even after a positive response to diet changes. This had lead me to believe that there must be, at least for some, an addictive component to these foods, much the same as many of my long term smokers still smoke, despite overwhelming evidence and advice to stop smoking. The science of behavioural change is clearly very complex!

    • Ah that is what I just read on a website from a Belgian functional medicine therapist!
      He talks about exprfines in gluten n

    • Ooops, hit ‘send’ while still typing!
      Well, he talks about the exorfines in gluten (and dairy and soy and spinach!) not being broken down due to an enzym deficiency or the enzym not working properly.
      The exorfines do not leave the body then but are taking over the place on dopamine receptors in the brain. Like the body can get addicted to morfine, it now is addicted to exorfines from gluten, because the eNdorfine system does not work properly anymore.
      There are 70 things endorfine takes care of and they all can get wrong because of the intake of exorfines. ADD, ADHD, diabetes, fybromyalgie, artritis, rheuma, etc.
      There’s heaps of info on that website and I can not tell it all here, but it is in Dutch…(I am Dutch) so maybe use google translate..?! It is exendo.be
      Sorry for the weird English, difficult subject to translate.

  13. I discovered my gluten sensitivity three years ago when my husband and I went primal. I was diagnosed with Rheumatoid Arthritis four years ago and have seen a significant reduction in symptoms by eating a gluten-free diet. Upon mentioning this to my rheumatologist, he ordered the standard celiac panel, which of course came back negative. However, I have made every effort to remain gluten-free and my quality of life has improved dramatically.

  14. I went grain free a few years ago, after stumbling onto Mark’s Daily Apple, which led me here. I’ve never done strict paleo, just follow the more lax Primal Blueprint. My eczema gastrointestinal issues cleared up right away, and slowly, so did the pain in my knuckles and elbows in cold weather (or really good air conditioning), I also noticed that my ADD symptoms improved. A few minor cheats later, I realized that corn caused my GI issues. Wheat messes with my eczema, joint pain, and ADD symptoms.

    I finally did a dairy free trial, and found that my sinus issues improved greatly. Pollen still kicks my butt, but not as bad as before, and I don’t stay congested year round anymore. I think I may have to go strict paleo, or even possibly autoimmune paleo, to get the remaining allergies and ADD symptoms cleared up. I’ve got to get my sleep straightened out first, because I don’t want to have to give up coffee for any length of time without adequate sleep.

    • My sleep is 100% after two sleep studies confirmed sleep apnea. The solution for me was not the CPAP machine. I see a dentist who has personalized a dental appliance that is re-training my lower jaw to its natural position.

  15. My problems started 4 years ago with a stomach that would ache, actually hurt for no reason, also constipation, gas, bloating etc. Started taking apple cider vinegar mixed with juice with my meals. Seemed to help, but still had issues. Quit that and went to betaine hydrochloride, now up to 4 pills per meal and WOW what a difference. I also started with real sauerkraut, probiotics, and enzymes. I used to be a big beer drinker, long story short, I had to quit as for some reason my body just would not tolerate that anymore thinking it was the wheat in the beer, after 45 years of consumption. I changed to wine and all was well. Then, I quit wheat and WOW things are now better than ever. Actually I am cured. I have zero problems now. I am so glad I was able to put 2+2 together (wheat in the beer) and wheat consumption in processed foods.

  16. Chris, I read some people who think they are gluten intolerant are really reacting to the glyphosphate (Roundup) that is sprayed on wheat just prior to harvesting to make it easier to harvest. Can you address this issue at some point?

    • According to Don Huber, glyphosate is sprayed on a lot of crops prior to harvest to make them “mature” faster. Therefore glycposate may be in a lot of foods that aren’t GMOs. You probably have to stick to organic foods and purified water to avoid it.

    • Roundup is a systemic desiccant herbicide. It kills the plant by drying it out. It is used in grain crops where uneven ripening is often a pre-harvest problem. If all the grain is dried out, it’s easier to mechanically harvest. However that means some of the harvested wheat is not fully ripened, as well as exposed to Round-up. These may both be an issue for digestive problems.

  17. I contracted PMR about 5 years ago. Symptoms are similar to arthritis tho it is not that. I have found that even one meal with hidden gluten will make it excruciatingly painful to walk. So it’s been really easy to cut gluten out of my life. I do also have Hashimotos and am allergic to caffeine. So very interesting article, Chris. Thank you.

    • I also have hosimotos and graves. My gluten symptoms manifest in the form of hives. My allergy panel came back with too many allergies to list. I do my best maintaining a diet that eliminates all of these, but most of my family does not understand and food is not accommodating at family events. I hope more articles like this will encourage research into some relief from all of this.

  18. After doing the reset diet for 2 months, I started adding back foods, following order suggested in Chris’s book. The first time I let my husband talk me into “Just a couple of pancakes probably won’t hurt..” I had gastric distress (cramps mainly) for 2 days. I haven’t knowingly had anything with wheat in it since. I’m 72 and have a congenital lung disorder (born without cilia) but am in much better physical health than my mother was at my age. She passed away from congestive heart failure at 76 so I’m hoping I have more years than she did!

  19. I checked but discovered the tests can only be ordered by a Dr. As a Vet, VA Dr will not order this for me. Is there a direct lab patients can order from that you know of? Thank you!!

    • Dominique, you can order Cyrex lab tests on Dr. Tom O’Bryan’s website, “thedr.com.” They also offer interpretive services for an additional fee. Good luck.

  20. I’ve always been told my problem was IBS, mixed with hypothiroidism. I just had to get used to feeling sick, to being exhausted, to feeling awful after every meal… Last year I finally got tested, results were negative but my gut was injured. So I just took gluten out of my life and the results are so obvious I don’t even think about reintroducing it to be sure. Doctors still tell me it’s in my head, that a change in diet can’t have such a huge impact on my health…